IL_2JL6_083

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_083 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.3678

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

2JL6|1|A|G|2124
2JL6|1|A|G|2125
2JL6|1|A|A|2126
2JL6|1|A|G|2127
*
2JL6|1|A|C|2161
2JL6|1|A|G|2162
2JL6|1|A|C|2163
2JL6|1|A|C|2164
2JL6|1|A|G|2165
2JL6|1|A|G|2166
2JL6|1|A|U|2167
2JL6|1|A|G|2168
2JL6|1|A|A|2169
2JL6|1|A|A|2170
2JL6|1|A|A|2171
2JL6|1|A|U|2172
2JL6|1|A|A|2173
2JL6|1|A|C|2174

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L1