IL_2JL6_091

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_091 not in the Motif Atlas

Geometric match to IL_7RQB_095

Geometric discrepancy: 0.0874

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

2JL6|1|A|C|2466
2JL6|1|A|C|2467
2JL6|1|A|G|2468
2JL6|1|A|A|2469
2JL6|1|A|G|2470
*
2JL6|1|A|C|2480
2JL6|1|A|G|2481
2JL6|1|A|G|2482
2JL6|1|A|C|2483
2JL6|1|A|G|2484

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain 9

50S RIBOSOMAL PROTEIN L36

Chain Q

50S RIBOSOMAL PROTEIN L16