IL_2JL6_098

3D structure

PDB id

2JL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome (part 2 of 4).This file contains the 50s subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JL6_098 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1073

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2JL6|1|A|C|2652
2JL6|1|A|U|2653
2JL6|1|A|A|2654
2JL6|1|A|G|2655
2JL6|1|A|U|2656
2JL6|1|A|A|2657
2JL6|1|A|C|2658
*
2JL6|1|A|G|2663
2JL6|1|A|G|2664
2JL6|1|A|A|2665
2JL6|1|A|C|2666
2JL6|1|A|C|2667
2JL6|1|A|G|2668

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L6