IL_2JQ7_003

3D structure

PDB id

2JQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton binding to the ribosomal L11-RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JQ7_003 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1708

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

2JQ7|2|B|C|1052
2JQ7|2|B|U|1053
2JQ7|2|B|G|1054
*
2JQ7|2|B|C|1105
2JQ7|2|B|A|1106
2JQ7|2|B|G|1107

Current chains

Chain B

RIBOSOMAL RNA

Nearby chains