IL_2JUK_008

3D structure

PDB id

2JUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

guanidino neomycin B recognition of an HIV-1 RNA helix

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUU,AAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JUK_008 not in the Motif Atlas

Geometric match to IL_4KR9_002

Geometric discrepancy: 0.2193

The information below is about IL_4KR9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

2JUK|9|A|C|4
2JUK|9|A|U|5
2JUK|9|A|U|6
*
2JUK|9|A|A|17
2JUK|9|A|A|18
2JUK|9|A|G|19

Current chains

Chain A

HIV-1 frameshift site RNA

Nearby chains