IL_2JUK_019

3D structure

PDB id

2JUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

guanidino neomycin B recognition of an HIV-1 RNA helix

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUU,AAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2JUK_019 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1894

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

2JUK|20|A|C|4
2JUK|20|A|U|5
2JUK|20|A|U|6
*
2JUK|20|A|A|17
2JUK|20|A|A|18
2JUK|20|A|G|19

Current chains

Chain A

HIV-1 frameshift site RNA

Nearby chains