IL_2KXM_017

3D structure

PDB id

2KXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCUUG*CC

Length

7 nucleotides

Bulged bases

2KXM|9|A|C|6, 2KXM|9|A|U|7, 2KXM|9|A|U|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2KXM_017 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.233

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

2KXM|9|A|G|5
2KXM|9|A|C|6
2KXM|9|A|U|7
2KXM|9|A|U|8
2KXM|9|A|G|9
*
2KXM|9|A|C|22
2KXM|9|A|C|23

Current chains

Chain A

RNA (27-MER)

Nearby chains