2KXM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2KXM_001 | 1/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_002 | 2/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_003 | 3/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_004 | 4/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_005 | 5/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_006 | 6/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_007 | 7/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_008 | 8/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_009 | 9/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 | |
| HL_2KXM_010 | 10/A/12:19 | T-loop related | geometric HL_5J7L_024 HL_77436.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2KXM_001 | 1/A/5:9, 1/A/22:23 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2KXM_002 | 1/A/9:11, 1/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_28037.2 | |
| IL_2KXM_003 | 2/A/5:9, 2/A/22:23 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_2KXM_004 | 2/A/9:11, 2/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_28037.2 | |
| IL_2KXM_005 | 3/A/5:9, 3/A/22:23 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_2KXM_006 | 3/A/9:11, 3/A/20:22 | Isolated non-canonical cWW pair | geometric IL_4V9F_047 IL_28037.2 | |
| IL_2KXM_007 | 4/A/5:9, 4/A/22:23 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2KXM_008 | 4/A/9:11, 4/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_28037.2 | |
| IL_2KXM_009 | 5/A/5:9, 5/A/22:23 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2KXM_010 | 5/A/9:11, 5/A/20:22 | Isolated non-canonical cWW pair | geometric IL_4V9F_047 IL_28037.2 | |
| IL_2KXM_011 | 6/A/5:9, 6/A/22:23 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2KXM_012 | 6/A/9:11, 6/A/20:22 | Isolated non-canonical cWW pair | geometric IL_4PCJ_001 IL_28037.2 | |
| IL_2KXM_013 | 7/A/5:9, 7/A/22:23 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_2KXM_014 | 7/A/9:11, 7/A/20:22 | Isolated non-canonical cWW pair | geometric IL_4V9F_047 IL_28037.2 | |
| IL_2KXM_015 | 8/A/5:9, 8/A/22:23 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2KXM_016 | 8/A/9:11, 8/A/20:22 | Isolated non-canonical cWW pair | geometric IL_4E48_006 IL_87907.2 | |
| IL_2KXM_017 | 9/A/5:9, 9/A/22:23 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_2KXM_018 | 9/A/9:11, 9/A/20:22 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_28037.2 | |
| IL_2KXM_019 | 10/A/5:9, 10/A/22:23 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_2KXM_020 | 10/A/9:11, 10/A/20:22 | Isolated non-canonical cWW pair | geometric IL_4PCJ_001 IL_28037.2 |
Problematic loops
No problematic loops
Valid loops
No loops found
Problematic loops
No problematic loops
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