IL_2LK3_002

3D structure

PDB id

2LK3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

U2/U6 Helix I

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUAG*CA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2LK3_002 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.3109

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

2LK3|2|A|U|4
2LK3|2|A|U|5
2LK3|2|A|A|6
2LK3|2|A|G|7
*
2LK3|2|A|C|20
2LK3|2|A|A|21

Current chains

Chain A

RNA (5'-R(*GP*GP*CP*UP*UP*AP*GP*AP*UP*CP*AP*GP*AP*AP*AP*UP*GP*AP*UP*CP*AP*GP*CP*C)-3')

Nearby chains