IL_2M4W_002

3D structure

PDB id

2M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

single G-bulge in a conserved regulatory region of the HEV genome

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AAU*AUGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2M4W_002 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3018

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

2M4W|2|A|A|3
2M4W|2|A|A|4
2M4W|2|A|U|5
*
2M4W|2|A|A|12
2M4W|2|A|U|13
2M4W|2|A|G|14
2M4W|2|A|U|15

Current chains

Chain A

RNA (5'-R(*GP*GP*AP*AP*UP*CP*GP*AP*AP*AP*GP*AP*UP*GP*UP*CP*C)-3')

Nearby chains