IL_2M4W_008

3D structure

PDB id

2M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

single G-bulge in a conserved regulatory region of the HEV genome

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AA*UGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2M4W_008 not in the Motif Atlas

Geometric match to IL_8GLP_012

Geometric discrepancy: 0.3732

The information below is about IL_8GLP_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48076.9

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

2M4W|8|A|A|3
2M4W|8|A|A|4
*
2M4W|8|A|U|13
2M4W|8|A|G|14
2M4W|8|A|U|15

Current chains

Chain A

RNA (5'-R(*GP*GP*AP*AP*UP*CP*GP*AP*AP*AP*GP*AP*UP*GP*UP*CP*C)-3')

Nearby chains