IL_2M4W_013

3D structure

PDB id

2M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

single G-bulge in a conserved regulatory region of the HEV genome

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AAU*AUGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2M4W_013 not in the Motif Atlas

Geometric match to IL_8C3A_070

Geometric discrepancy: 0.2659

The information below is about IL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

2M4W|7|A|A|3
2M4W|7|A|A|4
2M4W|7|A|U|5
*
2M4W|7|A|A|12
2M4W|7|A|U|13
2M4W|7|A|G|14
2M4W|7|A|U|15

Current chains

Chain A

RNA (5'-R(*GP*GP*AP*AP*UP*CP*GP*AP*AP*AP*GP*AP*UP*GP*UP*CP*C)-3')

Nearby chains