IL_2MQV_015

3D structure

PDB id

2MQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AUUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2MQV_015 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.288

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

2MQV|4|B|A|115
2MQV|4|B|U|116
2MQV|4|B|U|117
2MQV|4|B|G|118
*
2MQV|4|B|C|138
2MQV|4|B|U|139
2MQV|4|B|U|140
2MQV|4|B|U|141

Current chains

Chain B

RNA (68-MER)

Nearby chains

Chain A

Nucleocapsid protein p10