IL_2MS5_001

3D structure

PDB id

2MS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural dynamics of double-helical RNA having CAG motif

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2MS5_001 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1502

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

2MS5|1|A|C|4
2MS5|1|A|A|5
2MS5|1|A|G|6
*
2MS5|1|S|C|4
2MS5|1|S|A|5
2MS5|1|S|G|6

Current chains

Chain A

RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')

Chain S

RNA_(5'-R(P*CP*CP*GP*CP*AP*GP*CP*GP*G)-3')

Nearby chains