IL_2MXS_029

3D structure

PDB id

2MXS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR-structure of the neomycin sensing riboswitch RNA bound to paromomycin

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCUUG*CC

Length

7 nucleotides

Bulged bases

2MXS|15|A|C|6, 2MXS|15|A|U|7, 2MXS|15|A|U|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2MXS_029 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2713

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

2MXS|15|A|G|5
2MXS|15|A|C|6
2MXS|15|A|U|7
2MXS|15|A|U|8
2MXS|15|A|G|9
*
2MXS|15|A|C|22
2MXS|15|A|C|23

Current chains

Chain A

RNA (27-MER)

Nearby chains