IL_2NZ4_012

3D structure

PDB id

2NZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural investigation of the GlmS ribozyme bound to its catalytic cofactor

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUUU*GAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2NZ4_012 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.347

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

2NZ4|1|S|C|89
2NZ4|1|S|U|90
2NZ4|1|S|U|91
2NZ4|1|S|U|92
2NZ4|1|S|U|93
*
2NZ4|1|S|G|129
2NZ4|1|S|A|130
2NZ4|1|S|A|131
2NZ4|1|S|A|132
2NZ4|1|S|G|133

Current chains

Chain S

GlmS ribozyme

Nearby chains