IL_2O44_015

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

2O44|1|A|G|814, 2O44|1|A|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_015 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1063

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

2O44|1|A|G|687
2O44|1|A|A|688
2O44|1|A|A|689
2O44|1|A|A|690
2O44|1|A|C|691
*
2O44|1|A|G|812
2O44|1|A|A|813
2O44|1|A|G|814
2O44|1|A|A|815
2O44|1|A|U|816
2O44|1|A|A|817
2O44|1|A|G|818
2O44|1|A|C|819

Current chains

Chain A

23S rRNA

Nearby chains