IL_2O44_038

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUGU*GCGC

Length

9 nucleotides

Bulged bases

2O44|1|A|U|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_038 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.2934

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

2O44|1|A|G|1042
2O44|1|A|A|1043
2O44|1|A|U|1044
2O44|1|A|G|1045
2O44|1|A|U|1046
*
2O44|1|A|G|1131
2O44|1|A|C|1132
2O44|1|A|G|1133
2O44|1|A|C|1134

Current chains

Chain A

23S rRNA

Nearby chains