IL_2O44_106

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCUCC*GGUAG

Length

10 nucleotides

Bulged bases

2O44|1|A|U|2668, 2O44|1|A|C|2669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_106 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.1513

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

2O44|1|A|U|2666
2O44|1|A|C|2667
2O44|1|A|U|2668
2O44|1|A|C|2669
2O44|1|A|C|2670
*
2O44|1|A|G|2698
2O44|1|A|G|2699
2O44|1|A|U|2700
2O44|1|A|A|2701
2O44|1|A|G|2702

Current chains

Chain A

23S rRNA

Nearby chains