IL_2O45_009

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAGG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAGG,CCUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_009 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2934

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

2O45|1|A|C|162
2O45|1|A|A|163
2O45|1|A|G|164
2O45|1|A|G|165
*
2O45|1|A|C|185
2O45|1|A|C|186
2O45|1|A|U|187
2O45|1|A|G|188

Current chains

Chain A

23S rRNA

Nearby chains