IL_2O45_131

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGGC*GAUCU

Length

9 nucleotides

Bulged bases

2O45|1|A|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_131 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2706

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

2O45|1|A|A|1759
2O45|1|A|G|1760
2O45|1|A|G|1761
2O45|1|A|C|1762
*
2O45|1|A|G|1963
2O45|1|A|A|1964
2O45|1|A|U|1965
2O45|1|A|C|1966
2O45|1|A|U|1967

Current chains

Chain A

23S rRNA

Nearby chains