IL_2O45_141

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

2O45|1|A|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_141 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.3069

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_46868.1

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

2O45|1|A|U|1015
2O45|1|A|C|1016
2O45|1|A|C|1017
2O45|1|A|C|1018
2O45|1|A|U|1019
2O45|1|A|A|1020
2O45|1|A|A|1021
2O45|1|A|A|1022
*
2O45|1|A|U|1161
2O45|1|A|A|1162

Current chains

Chain A

23S rRNA

Nearby chains