IL_2O45_146

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

2O45|1|A|G|1223, 2O45|1|A|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_146 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2749

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

2O45|1|A|C|1221
2O45|1|A|G|1222
2O45|1|A|G|1223
2O45|1|A|A|1224
2O45|1|A|G|1225
2O45|1|A|A|1226
2O45|1|A|A|1227
2O45|1|A|G|1228
*
2O45|1|A|U|1247
2O45|1|A|G|1248
2O45|1|A|G|1249
2O45|1|A|A|1250
2O45|1|A|G|1251

Current chains

Chain A

23S rRNA

Nearby chains