IL_2OGO_001

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_001 not in the Motif Atlas

Homologous match to IL_7A0S_001

Geometric discrepancy: 0.1415

The information below is about IL_7A0S_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|G|24
2OGO|1|0|U|25
2OGO|1|0|G|26
2OGO|1|0|G|27
2OGO|1|0|A|28
2OGO|1|0|U|29
2OGO|1|0|G|30
*
2OGO|1|0|C|520
2OGO|1|0|U|521
2OGO|1|0|G|522
2OGO|1|0|A|523
2OGO|1|0|A|524
2OGO|1|0|A|525
2OGO|1|0|C|526

Current chains

Chain 0

23S ribosomal RNA

Nearby chains