IL_2OGO_006

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1186

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2OGO|1|0|G|165
2OGO|1|0|G|166
2OGO|1|0|A|167
2OGO|1|0|A|168
2OGO|1|0|C|169
2OGO|1|0|U|170
2OGO|1|0|G|171
*
2OGO|1|0|C|178
2OGO|1|0|U|179
2OGO|1|0|C|180
2OGO|1|0|A|181
2OGO|1|0|G|182
2OGO|1|0|U|183
2OGO|1|0|A|184
2OGO|1|0|C|185

Current chains

Chain 0

23S ribosomal RNA

Nearby chains