IL_2OGO_007

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_007 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1489

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2OGO|1|0|G|215
2OGO|1|0|U|216
2OGO|1|0|U|217
2OGO|1|0|A|218
2OGO|1|0|G|219
2OGO|1|0|U|220
2OGO|1|0|A|221
2OGO|1|0|G|222
*
2OGO|1|0|C|230
2OGO|1|0|G|231
2OGO|1|0|A|232
2OGO|1|0|A|233
2OGO|1|0|C|234
2OGO|1|0|C|235
2OGO|1|0|C|236

Current chains

Chain 0

23S ribosomal RNA

Nearby chains