IL_2OGO_009

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAAG*CGAACG

Length

10 nucleotides

Bulged bases

2OGO|1|0|C|358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_009 not in the Motif Atlas

Homologous match to IL_7A0S_008

Geometric discrepancy: 0.5777

The information below is about IL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.8

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

2OGO|1|0|C|303
2OGO|1|0|A|304
2OGO|1|0|A|305
2OGO|1|0|G|306
*
2OGO|1|0|C|354
2OGO|1|0|G|355
2OGO|1|0|A|356
2OGO|1|0|A|357
2OGO|1|0|C|358
2OGO|1|0|G|359

Current chains

Chain 0

23S ribosomal RNA

Nearby chains