IL_2OGO_011

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAAC*GAGUGAAAGAGAAC

Length

18 nucleotides

Bulged bases

2OGO|1|0|G|514, 2OGO|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_011 not in the Motif Atlas

Homologous match to IL_7A0S_009

Geometric discrepancy: 0.2261

The information below is about IL_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

2OGO|1|0|G|492
2OGO|1|0|A|493
2OGO|1|0|A|494
2OGO|1|0|C|495
*
2OGO|1|0|G|506
2OGO|1|0|A|507
2OGO|1|0|G|508
2OGO|1|0|U|509
2OGO|1|0|G|510
2OGO|1|0|A|511
2OGO|1|0|A|512
2OGO|1|0|A|513
2OGO|1|0|G|514
2OGO|1|0|A|515
2OGO|1|0|G|516
2OGO|1|0|A|517
2OGO|1|0|A|518
2OGO|1|0|C|519

Current chains

Chain 0

23S ribosomal RNA

Nearby chains