IL_2OGO_018

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_018 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.1347

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2OGO|1|0|U|716
2OGO|1|0|G|717
2OGO|1|0|A|718
2OGO|1|0|A|719
2OGO|1|0|A|720
2OGO|1|0|C|721
*
2OGO|1|0|G|736
2OGO|1|0|C|737
2OGO|1|0|G|738
2OGO|1|0|G|739
2OGO|1|0|A|740
2OGO|1|0|G|741

Current chains

Chain 0

23S ribosomal RNA

Nearby chains