IL_2OGO_036

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UCCCUAAA*UA

Length

10 nucleotides

Bulged bases

2OGO|1|0|U|1019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_036 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1538

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

2OGO|1|0|U|1015
2OGO|1|0|C|1016
2OGO|1|0|C|1017
2OGO|1|0|C|1018
2OGO|1|0|U|1019
2OGO|1|0|A|1020
2OGO|1|0|A|1021
2OGO|1|0|A|1022
*
2OGO|1|0|U|1161
2OGO|1|0|A|1162

Current chains

Chain 0

23S ribosomal RNA

Nearby chains