IL_2OGO_039

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

2OGO|1|0|C|1031, 2OGO|1|0|C|1152, 2OGO|1|0|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_039 not in the Motif Atlas

Geometric match to IL_7A0S_036

Geometric discrepancy: 0.2792

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

2OGO|1|0|C|1029
2OGO|1|0|U|1030
2OGO|1|0|C|1031
2OGO|1|0|A|1032
2OGO|1|0|G|1033
2OGO|1|0|U|1034
2OGO|1|0|G|1035
*
2OGO|1|0|C|1150
2OGO|1|0|U|1151
2OGO|1|0|C|1152
2OGO|1|0|A|1153
2OGO|1|0|A|1154
2OGO|1|0|G|1155

Current chains

Chain 0

23S ribosomal RNA

Nearby chains