IL_2OGO_050

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_050 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1439

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2OGO|1|0|A|1275
2OGO|1|0|U|1276
2OGO|1|0|G|1277
2OGO|1|0|A|1278
2OGO|1|0|G|1279
2OGO|1|0|U|1280
2OGO|1|0|A|1281
2OGO|1|0|A|1282
*
2OGO|1|0|U|1994
2OGO|1|0|G|1995
2OGO|1|0|A|1996
2OGO|1|0|A|1997
2OGO|1|0|A|1998
2OGO|1|0|U|1999
2OGO|1|0|U|2000

Current chains

Chain 0

23S ribosomal RNA

Nearby chains