IL_2OGO_066

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

2OGO|1|0|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_066 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1775

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|C|1703
2OGO|1|0|G|1704
2OGO|1|0|U|1705
2OGO|1|0|A|1706
2OGO|1|0|A|1707
2OGO|1|0|C|1708
*
2OGO|1|0|G|1713
2OGO|1|0|A|1714
2OGO|1|0|A|1715
2OGO|1|0|G|1716
2OGO|1|0|A|1717
2OGO|1|0|A|1718
2OGO|1|0|G|1719

Current chains

Chain 0

23S ribosomal RNA

Nearby chains