IL_2OGO_070

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

2OGO|1|0|C|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_070 not in the Motif Atlas

Homologous match to IL_7A0S_066

Geometric discrepancy: 0.1298

The information below is about IL_7A0S_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

2OGO|1|0|C|1829
2OGO|1|0|C|1830
2OGO|1|0|G|1831
2OGO|1|0|G|1832
*
2OGO|1|0|C|1885
2OGO|1|0|G|1886

Current chains

Chain 0

23S ribosomal RNA

Nearby chains