IL_2OGO_098

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_098 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1572

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

2OGO|1|0|C|2445
2OGO|1|0|C|2446
2OGO|1|0|G|2447
2OGO|1|0|A|2448
2OGO|1|0|G|2449
*
2OGO|1|0|C|2459
2OGO|1|0|G|2460
2OGO|1|0|G|2461
2OGO|1|0|C|2462
2OGO|1|0|G|2463

Current chains

Chain 0

23S ribosomal RNA

Nearby chains