IL_2OGO_103
3D structure
- PDB id
- 2OGO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.66 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 2OGO|1|0|G|2760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OGO_103 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.2293
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
2OGO|1|0|U|2615
2OGO|1|0|U|2616
2OGO|1|0|G|2617
2OGO|1|0|A|2618
2OGO|1|0|G|2619
*
2OGO|1|0|C|2754
2OGO|1|0|A|2755
2OGO|1|0|A|2756
2OGO|1|0|G|2757
2OGO|1|0|A|2758
2OGO|1|0|U|2759
2OGO|1|0|G|2760
2OGO|1|0|A|2761
2OGO|1|0|G|2762
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
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