IL_2OGO_105

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

2OGO|1|0|G|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_105 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.2495

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2OGO|1|0|C|2631
2OGO|1|0|U|2632
2OGO|1|0|A|2633
2OGO|1|0|G|2634
2OGO|1|0|U|2635
2OGO|1|0|A|2636
2OGO|1|0|C|2637
*
2OGO|1|0|G|2642
2OGO|1|0|G|2643
2OGO|1|0|A|2644
2OGO|1|0|C|2645
2OGO|1|0|C|2646
2OGO|1|0|G|2647

Current chains

Chain 0

23S ribosomal RNA

Nearby chains