IL_2OGO_109

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

2OGO|1|0|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_109 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1344

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2OGO|1|0|G|2717
2OGO|1|0|A|2718
2OGO|1|0|U|2719
2OGO|1|0|A|2720
2OGO|1|0|A|2721
2OGO|1|0|C|2722
*
2OGO|1|0|G|2742
2OGO|1|0|G|2743
2OGO|1|0|A|2744
2OGO|1|0|A|2745
2OGO|1|0|G|2746
2OGO|1|0|C|2747

Current chains

Chain 0

23S ribosomal RNA

Nearby chains