IL_2OGO_124

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAAG*CUGUAG

Length

10 nucleotides

Bulged bases

2OGO|1|0|U|2298, 2OGO|1|0|A|2299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_124 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3403

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|C|2276
2OGO|1|0|A|2277
2OGO|1|0|A|2278
2OGO|1|0|G|2279
*
2OGO|1|0|C|2295
2OGO|1|0|U|2296
2OGO|1|0|G|2297
2OGO|1|0|U|2298
2OGO|1|0|A|2299
2OGO|1|0|G|2300

Current chains

Chain 0

23S ribosomal RNA

Nearby chains