IL_2OTJ_048
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUGGAAG*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 2OTJ|1|0|G|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_048 not in the Motif Atlas
- Homologous match to IL_4V9F_048
- Geometric discrepancy: 0.0384
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
2OTJ|1|0|G|1312
2OTJ|1|0|A|1313
2OTJ|1|0|U|1314
2OTJ|1|0|G|1315
2OTJ|1|0|G|1316
2OTJ|1|0|A|1317
2OTJ|1|0|A|1318
2OTJ|1|0|G|1319
*
2OTJ|1|0|U|1338
2OTJ|1|0|G|1339
2OTJ|1|0|G|1340
2OTJ|1|0|A|1341
2OTJ|1|0|C|1342
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain T
- 50S ribosomal protein L24P
- Chain Y
- 50S ribosomal protein L32e
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