IL_2OTJ_089
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAC*GGAAAAGAG
- Length
- 14 nucleotides
- Bulged bases
- 2OTJ|1|0|G|2815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_089 not in the Motif Atlas
- Geometric match to IL_5J7L_345
- Geometric discrepancy: 0.2617
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
2OTJ|1|0|C|2672
2OTJ|1|0|U|2673
2OTJ|1|0|G|2674
2OTJ|1|0|A|2675
2OTJ|1|0|C|2676
*
2OTJ|1|0|G|2809
2OTJ|1|0|G|2810
2OTJ|1|0|A|2811
2OTJ|1|0|A|2812
2OTJ|1|0|A|2813
2OTJ|1|0|A|2814
2OTJ|1|0|G|2815
2OTJ|1|0|A|2816
2OTJ|1|0|G|2817
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
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