IL_2OTL_001
3D structure
- PDB id
- 2OTL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Girodazole bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGGAUU*AUGAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTL_001 not in the Motif Atlas
- Homologous match to IL_4V9F_001
- Geometric discrepancy: 0.0348
- The information below is about IL_4V9F_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
2OTL|1|0|G|21
2OTL|1|0|U|22
2OTL|1|0|G|23
2OTL|1|0|G|24
2OTL|1|0|A|25
2OTL|1|0|U|26
2OTL|1|0|U|27
*
2OTL|1|0|A|516
2OTL|1|0|U|517
2OTL|1|0|G|518
2OTL|1|0|A|519
2OTL|1|0|A|520
2OTL|1|0|A|521
2OTL|1|0|U|522
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain R
- 50S ribosomal protein L22P
- Chain Y
- 50S ribosomal protein L32e
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