IL_2OTL_048
3D structure
- PDB id
- 2OTL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Girodazole bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUGGAAG*UGGAC
- Length
- 13 nucleotides
- Bulged bases
- 2OTL|1|0|G|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTL_048 not in the Motif Atlas
- Homologous match to IL_4V9F_048
- Geometric discrepancy: 0.0415
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.1
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 23
Unit IDs
2OTL|1|0|G|1312
2OTL|1|0|A|1313
2OTL|1|0|U|1314
2OTL|1|0|G|1315
2OTL|1|0|G|1316
2OTL|1|0|A|1317
2OTL|1|0|A|1318
2OTL|1|0|G|1319
*
2OTL|1|0|U|1338
2OTL|1|0|G|1339
2OTL|1|0|G|1340
2OTL|1|0|A|1341
2OTL|1|0|C|1342
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain T
- 50S ribosomal protein L24P
- Chain Y
- 50S ribosomal protein L32e
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