3D structure

PDB id
2OTL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Girodazole bound to the large subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UAAUCCUCUGAAG*CCAAAAUGAUCGGGA
Length
28 nucleotides
Bulged bases
2OTL|1|0|A|1123, 2OTL|1|0|A|1231, 2OTL|1|0|U|1234
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2OTL_107 not in the Motif Atlas
Homologous match to IL_4V9F_109
Geometric discrepancy: 0.0244
The information below is about IL_4V9F_109
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_39721.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

2OTL|1|0|U|1122
2OTL|1|0|A|1123
2OTL|1|0|A|1124
2OTL|1|0|U|1125
2OTL|1|0|C|1126
2OTL|1|0|C|1127
2OTL|1|0|U|1128
2OTL|1|0|C|1129
2OTL|1|0|U|1130
2OTL|1|0|G|1131
2OTL|1|0|A|1132
2OTL|1|0|A|1133
2OTL|1|0|G|1134
*
2OTL|1|0|C|1228
2OTL|1|0|C|1229
2OTL|1|0|A|1230
2OTL|1|0|A|1231
2OTL|1|0|A|1232
2OTL|1|0|A|1233
2OTL|1|0|U|1234
2OTL|1|0|G|1235
2OTL|1|0|A|1236
2OTL|1|0|U|1237
2OTL|1|0|C|1238
2OTL|1|0|G|1239
2OTL|1|0|G|1240
2OTL|1|0|G|1241
2OTL|1|0|A|1242

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 9
5S ribosomal RNA; 5S rRNA
Chain B
50S ribosomal protein L3P
Chain H
50S ribosomal protein L10e
Chain J
50S ribosomal protein L13P
Chain W
50S ribosomal protein L30P

Coloring options:


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