IL_2QA4_012

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_012 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2108

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

2QA4|1|0|C|287
2QA4|1|0|A|288
2QA4|1|0|G|289
2QA4|1|0|C|290
*
2QA4|1|0|G|362
2QA4|1|0|A|363
2QA4|1|0|C|364
2QA4|1|0|G|365

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S ribosomal protein L15e