3D structure

PDB id
2QBG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF). This file contains the 50S subunit of the second 70S ribosome, with RRF bound. The entire crystal structure contains two 70S ribosomes and is described in remark 400.
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
2QBG|1|B|A|1938, 2QBG|1|B|U|1944, 2QBG|1|B|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15123.3
Basepair signature
cWW-L-R-cHW-L-L-L-L-L-cWW
Number of instances in this motif group
6

Unit IDs

2QBG|1|B|C|1934
2QBG|1|B|G|1935
2QBG|1|B|A|1936
2QBG|1|B|A|1937
2QBG|1|B|A|1938
2QBG|1|B|U|1939
2QBG|1|B|U|1940
2QBG|1|B|C|1941
2QBG|1|B|C|1942
2QBG|1|B|U|1943
2QBG|1|B|U|1944
2QBG|1|B|G|1945
*
2QBG|1|B|C|1961
2QBG|1|B|C|1962
2QBG|1|B|U|1963
2QBG|1|B|G|1964

Current chains

Chain B
23S rRNA

Nearby chains

Chain 6
ribosome recycling factor
Chain C
50S ribosomal protein L2

Coloring options:

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