IL_2UWM_001

3D structure

PDB id

2UWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.31 Å

Loop

Sequence

GUU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUU,AAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UWM_001 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.1069

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

2UWM|1|C|G|16
2UWM|1|C|U|17
2UWM|1|C|U|18
*
2UWM|1|C|A|30
2UWM|1|C|A|31
2UWM|1|C|C|32

Current chains

Chain C

5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP *GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3'

Nearby chains

Chain A

SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR

Chain B

SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR