IL_2UXB_022
3D structure
- PDB id
- 2UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 2UXB|1|A|A|532, 2UXB|1|A|U|534, 2UXB|1|A|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UXB_022 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2098
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
2UXB|1|A|G|515
2UXB|1|A|U|516
2UXB|1|A|G|517
2UXB|1|A|C|518
2UXB|1|A|C|519
2UXB|1|A|A|520
2UXB|1|A|G|521
*
2UXB|1|A|C|528
2UXB|1|A|G|529
2UXB|1|A|G|530
2UXB|1|A|U|531
2UXB|1|A|A|532
2UXB|1|A|A|533
2UXB|1|A|U|534
2UXB|1|A|A|535
2UXB|1|A|C|536
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain C
- RIBOSOMAL PROTEIN S3
- Chain D
- RIBOSOMAL PROTEIN S4
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain L
- RIBOSOMAL PROTEIN S12
- Chain X
- A-SITE MESSENGER RNA FRAGMENT GGGU
- Chain Y
- ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC
Coloring options: