IL_2UXD_051
3D structure
- PDB id
- 2UXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UXD_051 not in the Motif Atlas
- Homologous match to IL_4LFB_055
- Geometric discrepancy: 0.1139
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85536.2
- Basepair signature
- cWW-tSH-L-R-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
2UXD|1|A|C|1303
2UXD|1|A|G|1304
2UXD|1|A|G|1305
2UXD|1|A|A|1306
2UXD|1|A|U|1307
2UXD|1|A|U|1308
*
2UXD|1|A|A|1329
2UXD|1|A|U|1330
2UXD|1|A|G|1331
2UXD|1|A|A|1332
2UXD|1|A|A|1333
2UXD|1|A|G|1334
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain M
- RIBOSOMAL PROTEIN S13
- Chain S
- RIBOSOMAL PROTEIN S19
- Chain V
- RIBOSOMAL PROTEIN THX
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