IL_2VQE_050
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGGAUU*AUGAAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2VQE_050 not in the Motif Atlas
- Homologous match to IL_4LFB_055
- Geometric discrepancy: 0.0806
- The information below is about IL_4LFB_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57885.2
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
2VQE|1|A|C|1303
2VQE|1|A|G|1304
2VQE|1|A|G|1305
2VQE|1|A|A|1306
2VQE|1|A|U|1307
2VQE|1|A|U|1308
*
2VQE|1|A|A|1329
2VQE|1|A|U|1330
2VQE|1|A|G|1331
2VQE|1|A|A|1332
2VQE|1|A|A|1333
2VQE|1|A|G|1334
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain S
- 30S RIBOSOMAL PROTEIN S19
- Chain U
- 30S RIBOSOMAL PROTEIN THX
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